Genomic resources

NextSpain COVID-19 interactive epidemiological map using Nextstrain.
NextSpain COVID-19 shows the results obtained from the analysis of complete genome sequences of SARS-CoV-2 deposited in GISAID or other publicly accessible databases. The analyses are performed with the NextStrain engine to inform the scientific community and the general public about the genomic epidemiology of COVID-19 in Spain: SeqCOVID Genomic epidemiology of COVID-19 in Spain. The epidemiological map is built with this code and it is mantained by FISABIO Sequencing and Bioinformatics Service and Tuberculosis Genomics Unit (IBV-CSIC).

Interactive epidemiological map of SARS-CoV-2 in Andalusia using Nextstrain.
This map is part of the project "Sequencing of the SARS-CoV-2 virus genome for the monitoring and management of the COVID-19 epidemic in Andalusia and the rapid generation of prognostic and response to treatment biomarkers". The consortium is made up of 14 hospitals and 5 Health Research Institutes from the Andalusia region, the Technical Office for Information Management, the Regional Management of Public Health (Epidemiological Surveillance and Occupational Health Service) and the Fundaci├│n Progreso y Salud (FPS). The epidemilogical map has been developed and is maintained by the Clinical Bioinformatics Area at the FPS.

Widget screenshot of Andalusia CovSeq
This section will be periodically updated with new genomic resources when available.

Viral sequences

This section shows the samples sequenced from Severe acute respiratory syndrome coronavirus 2 (taxon: 2697049) in Spain. These results are periodically retrieved from ENA.

Powered by ENA

Accession Collection date Country Host Isolate Description TAXON

Host sequences

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